Suchergebnisse

13 páginas, 5 figuras, 1 tabla. ; Marine sponges often harbor photosynthetic symbionts that may enhance host metabolism and ecological success, yet little is known about the factors that structure the diversity, specificity, and nature of these relationships. Here, we characterized the cyanobacterial symbionts in two congeneric and sympatric host sponges that exhibit distinct habitat preferences correlated with irradiance: Ircinia fasciculata (higher irradiance) and Ircinia variabilis (lower irradiance). Symbiont composition was similar among hosts and dominated by the sponge-specific cyanobacterium Synechococcus spongiarum. Phylogenetic analyses of 16S–23S rRNA internal transcribed spacer (ITS) gene sequences revealed that Mediterranean Ircinia spp. host a specific, novel symbiont clade ("M") within the S. spongiarum species complex. A second, rare cyanobacterium related to the ascidian symbiont Synechocystis trididemni was observed in low abundance in I. fasciculata and likewise corresponded to a new symbiont clade. Symbiont communities in I. fasciculata exhibited nearly twice the chlorophyll a concentrations of I. variabilis. Further, S. spongiarum clade M symbionts in I. fasciculata exhibited dense intracellular aggregations of glycogen granules, a storage product of photosynthetic carbon assimilation rarely observed in I. variabilis symbionts. In both host sponges, S. spongiarum cells were observed interacting with host archeocytes, although the lower photosynthetic activity of Cyanobacteria in I. variabilis suggests less symbiont-derived nutritional benefit. The observed differences in clade M symbionts among sponge hosts suggest that ambient irradiance conditions dictate symbiont photosynthetic activity and consequently may mediate the nature of host–symbiont relationships. In addition, the plasticity exhibited by clade M symbionts may be an adaptive attribute that allows for flexibility in host–symbiont interactions across the seasonal fluctuations in light and temperature characteristic of temperate environments. ; This research was supported by the Spanish Government projects CTM2010- 17755 and CTM2010-22218, the Catalan Government grant 2009SGR- 484 for Consolidated Research Groups, and by the US National Science Foundation under grant 0853089. ; Peer reviewed

53 pages, 10 figures, 20 tables ; This paper provides an overview of the last 40 years of use, and in many cases abuse, of the natural resources in Catalonia, a country that is representative of European countries in general, and especially those in the Mediterranean region. It analyses the use of natural resources made by mining, agriculture, livestock, logging, fishing, nature tourism, and energy production and consumption. This use results in an ecological footprint, i.e., the productive land and sea surface required to generate the consumed resources and absorb the resulting waste, which is about seven times the amount available, a very high number but very similar to other European countries. This overexploitation of natural resources has a huge impact on land and its different forms of cover, air, and water. For the last 25 years, forests and urban areas have each gained almost 3% more of the territory at the expense of agricultural land; those municipalities bordering the sea have increased their number of inhabitants and activity, and although they only occupy 6.7% of the total surface area, they account for 43.3% of the population; air quality has stabilized since the turn of the century, and there has been some improvement in the state of aquatic ecosystems, but still only 36% are in good condition, while the remainder have suffered morphological changes and different forms of nonpoint source pollution; meanwhile the biodiversity of flora and fauna remains still under threat. Environmental policies do not go far enough so there is a need for revision of the legislation related to environmental impact and the protection of natural areas, flora, and fauna. The promotion of environmental research must be accompanied by environmental education to foster a society which is more knowledgeable, has more control and influence over the decisions that deeply affect it. Indeed, nature conservation goes hand in hand with other social and economic challenges that require a more sustainable vision. Today's problems with nature derive from the current economic model, which is environmentally unsustainable in that it does not take into account environmental impacts. Lastly, we propose a series of reasonable and feasible priority measures and actions related to each use made of the country's natural resources, to the impacts they have had, and to their management, in the hope that these can contribute to improving the conservation and management of the environment and biodiversity and move towards sustainability ; This research was funded by the Institut d'Estudis Catalans (IEC). With the funding support of the 'Severo Ochoa Centre of Excellence' accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) ; Peer reviewed

Artículo de 7 páginas sobre secuencación de genomas que incluye tablas de estadísticas, gráficos de correlación e histogramas. ; Each day, as the amount of genomic data and bioinformatics resources grows, researchers are increasingly challenged with selecting the most appropriate approach to analyze their data. In addition, the opportunity to undertake comparative genomic analyses is growing rapidly. This is especially true for fungi due to their small genome sizes (i.e., mean 1C=44.2Mb). Given these opportunities and aiming to gain novel insights into the evolution of mutualisms, we focus on comparing the quality of whole genome assemblies for fungus-growing ants cultivars (Hymenoptera: Formicidae: Attini) and a free-living relative. Our analyses reveal that currently available methodologies and pipelines for analyzing whole-genome sequence data need refining. By using different genome assemblers, we show that the genome assembly size depends on what software is used. This, in turn, impacts gene number predictions, with higher gene numbers correlating positively with genome assembly size. Furthermore, the majority of fungal genome size data currently available are based on estimates derived from whole-genome assemblies generated from short-read genome data, rather than from the more accurate technique of flow cytometry. Here, we estimated the haploid genome sizes of three ant fungal symbionts by flow cytometry using the fungus Pleurotus ostreatus (Jacq.) P. Kumm. (1871) as a calibration standard. We found that published genome sizes based on genome assemblies are 2.5- to 3-fold larger than our estimates based on flow cytometry. We, therefore, recommend that flow cytometry is used to precalibrate genome assembly pipelines, to avoid incorrect estimates of genome sizes and ensure robust assemblies. ; P.W.K. received funding from CAPES-PrInt (Grant #88887.468939/2019-00) and J.P. benefited from a Ramon y Cajal Fellowship (RYC-2017-2274) from the government of Spain. ; Abstract Results and Discussion Supplementary Material Acknowledgments Literature Cited Supplementary data

Coral bleaching, caused by the loss of brownish-colored dinoflagellate photosymbionts from the host tissue of reef-building corals, is a major threat to reef survival. Occasionally, bleached corals become exceptionally colorful rather than white. These colors derive from photoprotective green fluorescent protein (GFP)-like pigments produced by the coral host. There is currently no consensus regarding what causes colorful bleaching events and what the consequences for the corals are. Here, we document that colorful bleaching events are a recurring phenomenon in reef regions around the globe. Our analysis of temperature conditions associated with colorful bleaching events suggests that corals develop extreme coloration within 2 to 3 weeks after exposure to mild or temporary heat stress. We demonstrate that the increase of light fluxes in symbiont-depleted tissue promoted by reflection of the incident light from the coral skeleton induces strong expression of the photoprotective coral host pigments. We describe an optical feedback loop involving both partners of the association, discussing that the mitigation of light stress offered by host pigments could facilitate recolonization of bleached tissue by symbionts. Our data indicate that colorful bleaching has the potential to identify local environmental factors, such as nutrient stress, that can exacerbate the impact of elevated temperatures on corals, to indicate the severity of heat stress experienced by corals and to gauge their post-stress recovery potential. VIDEO ABSTRACT. ; The authors thank Alex Thomson (Scottish Association for Marine Science) for collecting the P. lichen high light acclimation data and Ryan Goehrung (University of Washington), Courtney Couch (NOAA), Richard Vevers (The Ocean Agency), Martin Savers (Reefscapers at http://reefscapers.com), Shreya Yadav (Hawaiʻi Institute of Marine Biology), Ed Roberts (Tethys Images), Michael Fox (Woods Hole Oceanographic Institution), Bill McGraw (https://www.newaquatechpanama.com), Tess Moriarty (University of Newcastle), Fanny Houlbreque (Institute de la Recherce pour le Développement), Andy Bruckner (Coral Reef CPR), Chris Jones (Great Barrier Reef Marine Park Authority), Brian Zgliczynski (Scripps Institution of Oceanography), Louise Laing (People4Ocean), and Darren Coker (JCU Townsville) for providing photographs and background information on colorful bleaching events. The authors acknowledge funding from Natural Environmental Research Council (http://www.nerc.ac.uk/; PhD studentship under NE/L002531/1 to E.B.; NE/I01683X/1, NE/K00641X/1, and NE/I012648/1 to J.W. and C.D.), Deutsche Forschungsgemeinschaft (http://www.dfg.de; Wi1990/2-1 to J.W.), ASSEMBLE (to J.W. and C.D.), the European Research Council (http://erc.europa.eu/) under the European Union's Seventh Framework Programme (ERC grant agreement no. 311179 to J.W.), Tropical Marine Centre London, and Tropic Marin, Wartenberg (NERC CASE studentship to E.B.; sponsorship to the Coral Reef Laboratory).

Abstract
Blood-feeding is crucial for the reproductive cycle of the mosquito Aedes aegypti, as well as for the transmission of arboviruses to hosts. It is postulated that blood meals may influence the mosquito microbiome but shifts in microbial diversity and function during digestion remain elusive. We used whole-genome shotgun metagenomics to monitor the midgut microbiome in 60 individual females of A. aegypti throughout digestion, after 12, 24, and 48 h following blood or sugar meals. Additionally, ten individual larvae were sequenced, showing microbiomes dominated by Microbacterium sp. The high metagenomic coverage allowed for microbial assignments at the species taxonomic level, also providing functional profiling. Females in the post-digestive period and larvae displayed low microbiome diversities. A striking proliferation of Enterobacterales was observed during digestion in blood-fed mosquitoes. The compositional shift was concomitant with enrichment in genes associated with carbohydrate and protein metabolism, as well as virulence factors for antimicrobial resistance and scavenging. The bacterium Elizabethkingia anophelis (Flavobacteriales), a known human pathogen, was the dominant species at the end of blood digestion. Phylogenomics suggests that its association with hematophagous mosquitoes occurred several times. We consider evidence of mutually beneficial host-microbe interactions raised from this association, potentially pivotal for the mosquito's resistance to arbovirus infection. After digestion, the observed shifts in blood-fed females' midguts shifted to a sugar-fed-like microbial profile. This study provides insights into how the microbiome of A. aegypti is modulated to fulfil digestive roles following blood meals, emphasizing proliferation of potential symbionts in response to the dynamic midgut environment.

Abstract
The modular architecture of nonribosomal peptide synthetases (NRPSs) has inspired efforts to study their evolution and engineering. In this study, we analyze in detail a unique family of NRPSs from the defensive intracellular bacterial symbiont, Candidatus Endobryopsis kahalalidifaciens (Ca. E. kahalalidifaciens). We show that intensive and indiscriminate recombination events erase trivial sequence covariations induced by phylogenetic relatedness, revealing nonmodular functional constraints and clear recombination units. Moreover, we reveal unique substrate specificity determinants for multiple enzymatic domains, allowing us to accurately predict and experimentally discover the products of an orphan NRPS in Ca. E. kahalalidifaciens directly from environmental samples of its algal host. Finally, we expanded our analysis to 1,531 diverse NRPS pathways and revealed similar functional constraints to those observed in Ca. E. kahalalidifaciens' NRPSs. Our findings reveal the sequence bases of genetic exchange, functional constraints, and substrate specificity in Ca. E. kahalalidifaciens' NRPSs, and highlight them as a uniquely primed system for diversifying evolution.

Ulf Büntgen.[et.al.] ; The Périgord black truffle is an exclusive culinary delicacy, but its Mediterranean harvests have declined, despite cultivation efforts since the 1970s. The role of long-term irrigation, symbiotic fungus-host interaction, and microbial belowground progression remain poorly understood, because generally too short experimental settings miss the necessary degree of real world complexity and reliable information from truffle orchards is limited. Here, we conduct the first dendrochronological and wood anatomical assessment of 295 holm oaks, which have been growing under different irrigation intensities in the world's largest truffle orchard in Spain. The relationships between different climatic variables (monthly temperature means and precipitation totals) and dendro-parameters (ring width, vessel count and vessel size) of the oak hosts are utilized to disentangle direct and indirect drivers of truffle fruit body production. Irrigation at medium - instead of high - intensity is most beneficial for oak growth. Non-irrigated trees reveal overall lower stem increments. Warmer temperatures from February to April and wetter conditions from May to July enhance host vitality and possibly also its interplay with fungi symbionts via increased fine root production and mycorrhizal colonization. Adequately irrigated Mediterranean orchards may counteract some of the drought-induced natural truffle decline, and help stabilizing rural tourism, regional agriculture and global markets. © 2014 Elsevier B.V. ; Supported by the WSL-internal DITREC project, the Ernst Göhner Foundation, the ClimFun project of the Norwegian RC (No. 225043), the project AGL2012-40035-C03 (Government of Spain), the project Micosylva+ (Interreg IVB SUDOE SOE3/P2/E533), the Government of Castilla y León, ARAID, the project Xilva (CGL2011-26654, Economy and Competitiveness Ministry), as well as the Operational Program of Education for Competitiveness of Ministry of Education, Youth and Sports of the Czech Republic (No. CZ.1.07/2.3.00/20.0248). We are particularly thankful to the Arotz Food Company for helping us to develop this research (via José Cuenca). José Miguel Altelarrea and to José Antonio Vega Borjabad (Cesefor Foundation) contributed to the fieldwork. ; Peer Reviewed

The Périgord black truffle is an exclusive culinary delicacy, but its Mediterranean harvests have declined, despite cultivation efforts since the 1970s. The role of long-term irrigation, symbiotic fungus-host interaction, and microbial belowground progression remain poorly understood, because generally too short experimental settings miss the necessary degree of real world complexity and reliable information from truffle orchards is limited. Here, we conduct the first dendrochronological and wood anatomical assessment of 295 holm oaks, which have been growing under different irrigation intensities in the world's largest truffle orchard in Spain. The relationships between different climatic variables (monthly temperature means and precipitation totals) and dendro-parameters (ring width, vessel count and vessel size) of the oak hosts are utilized to disentangle direct and indirect drivers of truffle fruit body production. Irrigation at medium - instead of high - intensity is most beneficial for oak growth. Non-irrigated trees reveal overall lower stem increments. Warmer temperatures from February to April and wetter conditions from May to July enhance host vitality and possibly also its interplay with fungi symbionts via increased fine root production and mycorrhizal colonization. Adequately irrigated Mediterranean orchards may counteract some of the drought-induced natural truffle decline, and help stabilizing rural tourism, regional agriculture and global markets. ; Supported by the WSL-internal DITREC project, the Ernst Göhner Foundation, the ClimFun project of the Norwegian RC (No. 225043), the project AGL2012-40035-C03 (Government of Spain), the project Micosylva+ (Interreg IVB SUDOE SOE3/P2/E533), the Government of Castilla y León, ARAID, the project Xilva (CGL2011-26654, Economy and Competitiveness Ministry), as well as the Operational Program of Education for Competitiveness of Ministry of Education, Youth and Sports of the Czech Republic (No. CZ.1.07/2.3.00/20.0248).