Global projections of the soil microbiome in the Anthropocene
Aim: Soil microbes are essential for maintenance of life‐supporting ecosystem services, but projections of how these microbes will be affected by global change scenarios are lacking. Therefore, our aim was to provide projections of future soil microbial distribution using several scenarios of global change. Location: Global. Time period: 1950–2090. Major taxa studied: Bacteria and fungi. Methods: We used a global database of soil microbial communities across six continents to estimate past and future trends of the soil microbiome. To do so, we used structural equation models to include the direct and indirect effects of changes in climate and land use in our predictions, using current climate (temperature and precipitation) and land‐use projections between 1950 and 2090. Results: Local bacterial richness will increase in all scenarios of change in climate and land use considered, although this increase will be followed by a generalized community homogenization process affecting > 85% of terrestrial ecosystems. Changes in the relative abundance of functional genes associated with the increases in bacterial richness are also expected. Based on an ecological cluster analysis, our results suggest that phylotypes such as Geodermatophilus spp. (typical desert bacteria), Mycobacterium sp. (which are known to include important human pathogens), Streptomyces mirabilis (major producers of antibiotic resistance genes) or potential fungal soil‐borne plant pathogens belonging to Ascomycota fungi (Venturia spp., Devriesia spp.) will become more abundant in their communities. Main conclusions: Our results provide evidence that climate change has a stronger influence on soil microbial communities than change in land use (often including deforestation and agricultural expansion), although most of the effects of climate are indirect, through other environmental variables (e.g., changes in soil pH). The same was found for microbial functions such as the prevalence of phosphate transport genes. We provide reliable predictions about the changes in the global distribution of microbial communities, showing an increase in alpha diversity and a homogenization of soil microbial communities in the Anthropocene. ; This manuscript was developed from discussions within the German Centre of Integrative Biodiversity Research funded by the Deutsche Forschungsgemeinschaft (DFG FZT118). C.A.G. and N.E. acknowledge funding by iDiv (DFG FZT118) Flexpool proposals 34600850 and 34600844. N.E. acknowledges funding by the DFG (FOR 1451) and the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement no. 677232). E.D. acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG GRK 2297 –314838170), MathCoRe. M.D.-B. acknowledges support from the Marie Sklodowska-Curie Actions of the Horizon 2020 Framework Program H2020-MSCA-IF-2016 under REA grant agreement number 702057. F.T.M. acknowledges support from the European Research Council grant agreement number 647038 (BIODESERT).